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I tried your patch, it's great! The only glitch is that you'd better add lnum_config.h to TO_INC variable in lua-5.1.3-patched/Makefile, so that it will be installed properly. Thank you for the great patch!
BTW, do you know is there any script support uint64 natively? I digged into _javascript_ and ruby before saw your note, they all seems not support uint64 natively.
One way is to use the LNUM patch and compile with LNUM_INT64 defined.
http://luaforge.net/frs/?group_id=214